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1

Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus

Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M.

Journal:

Year:

2010

Language:

english

File:

PDF, 361 KB

english, 2010

2

Sequence variation database project at the European Bioinformatics Institute

Heikki Lehväslaiho, Elia Stupka, Michael Ashburner

Journal:

Year:

2000

Language:

english

File:

PDF, 157 KB

english, 2000

3

Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools

Yang Li, Jer Ming Chia, Richard Bartfai, Alan Christoffels, Gen Hua Yue, Ke Ding, Mei Yin Ho, James A. Hill, Elia Stupka, Laszlo Orban

Journal:

Comparative and Functional Genomics

Year:

2004

Language:

english

File:

PDF, 495 KB

english, 2004

4

Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

Dario Motti, Caroline Le Duigou, Emmanuel Eugène, Nicole Chemaly, Lucia Wittner, Dejan Lazarevic, Helena Krmac, Troels Marstrand, Eivind Valen, Remo Sanges, Elia Stupka, Albin Sandelin, Enrico Cherubi

Journal:

European Journal of Neuroscience

Year:

2010

Language:

english

File:

PDF, 956 KB

english, 2010

5

Tprg, a Gene Predominantly Expressed in Skin, Is a Direct Target of the Transcription Factor p63

Antonini, Dario, Dentice, Monica, Mahtani, Parvesh, De Rosa, Laura, Gatta, Giusy Della, Mandinova, Anna, Salvatore, Domenico, Stupka, Elia, Missero, Caterina

Journal:

The Journal of Investigative Dermatology

Year:

2008

Language:

english

File:

PDF, 2.32 MB

english, 2008

6

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

Danilo Licastro, Vincenzo A Gennarino, Francesca Petrera, Remo Sanges, Sandro Banfi, Elia Stupka

Journal:

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

7

Epigenetic Regulation of Survivin by Bmi1 Is Cell Type Specific During Corticogenesis and in Gliomas

Acquati, Serena, Greco, Azzura, Licastro, Danilo, Bhagat, Heeta, Ceric, Dario, Rossini, Zefferino, Grieve, Joan, Shaked-Rabi, Maya, Henriquez, Nick V., Brandner, Sebastian, Stupka, Elia, Marino, Silvi

Journal:

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

8

Genome-wide signatures of convergent evolution in echolocating mammals

Parker, Joe, Tsagkogeorga, Georgia, Cotton, James A., Liu, Yuan, Provero, Paolo, Stupka, Elia, Rossiter, Stephen J.

Journal:

Year:

2013

Language:

english

File:

PDF, 527 KB

english, 2013

9

Phylogenomic Analyses Elucidate the Evolutionary Relationships of Bats

Tsagkogeorga, Georgia, Parker, Joe, Stupka, Elia, Cotton, James A., Rossiter, Stephen J.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 438 KB

english, 2013

10

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study

Carrera, Paola, Di Resta, Chiara, Volonteri, Chiara, Castiglioni, Emanuela, Bonfiglio, Silvia, Lazarevic, Dejan, Cittaro, Davide, Stupka, Elia, Ferrari, Maurizio, Somaschini, Marco

Journal:

Clinica Chimica Acta

Year:

2015

Language:

english

File:

PDF, 378 KB

english, 2015

11

VISPA: a computational pipeline for the identification and analysis of genomic vector integration sites

Calabria, Andrea, Leo, Simone, Benedicenti, Fabrizio, Cesana, Daniela, Spinozzi, Giulio, Orsini, Massimilano, Merella, Stefania, Stupka, Elia, Zanetti, Gianluigi, Montini, Eugenio

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

12

Dissecting the signaling pathways associated with the oncogenic activity of MLK3 P252H mutation

Velho, Sérgia, Pinto, Ana, Licastro, Danilo, Oliveira, Maria, Sousa, Filipa, Stupka, Elia, Seruca, Raquel

Journal:

Year:

2014

Language:

english

File:

PDF, 718 KB

english, 2014

13

Characterization of the intronic portion of cadherin superfamily members, common cancer orchestrators

Oliveira, Patrícia, Sanges, Remo, Huntsman, David, Stupka, Elia, Oliveira, Carla

Journal:

European Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 359 KB

english, 2012

14

Epigenetics and Future Generations

del Savio, Lorenzo, Loi, Michele, Stupka, Elia

Journal:

Year:

2015

Language:

english

File:

PDF, 99 KB

english, 2015

15

Large Deletion of MAGT1 Gene in a Patient with Classic Kaposi Sarcoma, CD4 Lymphopenia, and EBV Infection

Brigida, Immacolata, Chiriaco, Maria, Di Cesare, Silvia, Cittaro, Davide, Di Matteo, Gigliola, Giannelli, Stefania, Lazarevic, Dejan, Zoccolillo, Matteo, Stupka, Elia, Jenkner, Alessandro, Francalanci

Journal:

Journal of Clinical Immunology

Year:

2017

Language:

english

File:

PDF, 663 KB

english, 2017

16

miR-17∼92 family clusters control iNKT cell ontogenesis via modulation of TGF-β signaling

Fedeli, Maya, Riba, Michela, Garcia Manteiga, Jose Manuel, Tian, Lei, Viganò, Valentina, Rossetti, Grazisa, Pagani, Massimiliano, Xiao, Changchun, Liston, Adrian, Stupka, Elia, Cittaro, Davide, Abrign

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

17

36. Genome-Wide Insight Into the Transcriptional Modulations Triggered By Lentiviral Transduction in Human Hematopoietic Stem Cells

Piras, Francesco, Riba, Michela, Lazarevic, Dejan, Bartolaccini, Sara, Stupka, Elia, Cittaro, Davide, Naldini, Luigi, Kajaste-Rudnitski, Anna

Journal:

Molecular Therapy

Year:

2015

Language:

english

File:

PDF, 328 KB

english, 2015

18

Lentiviral vectors escape innate sensing but trigger p53 in human hematopoietic stem and progenitor cells

Piras, Francesco, Riba, Michela, Petrillo, Carolina, Lazarevic, Dejan, Cuccovillo, Ivan, Bartolaccini, Sara, Stupka, Elia, Gentner, Bernhard, Cittaro, Davide, Naldini, Luigi, Kajaste‐Rudnitski, Anna

Journal:

EMBO Molecular Medicine

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

19

Revealing the acute asthma ignorome: characterization and validation of uninvestigated gene networks

Riba, Michela, Garcia Manteiga, Jose Manuel, Bošnjak, Berislav, Cittaro, Davide, Mikolka, Pavol, Le, Connie, Epstein, Michelle M., Stupka, Elia

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

20

Histone Modifications in a Mouse Model of Early Adversities and Panic Disorder: Role for Asic1 and Neurodevelopmental Genes

Cittaro, Davide, Lampis, Valentina, Luchetti, Alessandra, Coccurello, Roberto, Guffanti, Alessandro, Felsani, Armando, Moles, Anna, Stupka, Elia, D’ Amato, Francesca R., Battaglia, Marco

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

21

An RNA-Seq atlas of gene expression in mouse and rat normal tissues

Söllner, Julia F., Leparc, German, Hildebrandt, Tobias, Klein, Holger, Thomas, Leo, Stupka, Elia, Simon, Eric

Journal:

Scientific Data

Year:

2017

Language:

english

File:

PDF, 2.00 MB

english, 2017

22

Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data

Zhang, Yanju, Stupka, Elia, Henkel, Christiaan V., Jansen, Hans J., Spaink, Herman P., Verbeek, Fons J.

Journal:

Journal of Integrative Bioinformatics

Year:

2011

Language:

english

File:

PDF, 799 KB

english, 2011

23

A Strong Anti-Inflammatory Signature Revealed by Liver Transcription Profiling of Tmprss6−/− Mice

Riba, Michela, Rausa, Marco, Sorosina, Melissa, Cittaro, Davide, Garcia Manteiga, Jose Manuel, Nai, Antonella, Pagani, Alessia, Martinelli-Boneschi, Filippo, Stupka, Elia, Camaschella, Clara, Silvestr

Journal:

Year:

2013

Language:

english

File:

PDF, 4.09 MB

english, 2013

24

Genome Wide Identification of Aberrant Alternative Splicing Events in Myotonic Dystrophy Type 2

Perfetti, Alessandra, Greco, Simona, Fasanaro, Pasquale, Bugiardini, Enrico, Cardani, Rosanna, Manteiga, Jose M. Garcia., Riba, Michela, Cittaro, Davide, Stupka, Elia, Meola, Giovanni, Martelli, Fabio

Journal:

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

25

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model

Garcia-Manteiga, Jose M., Bonfiglio, Silvia, Malosio, Maria Luisa, Lazarevic, Dejan, Stupka, Elia, Cittaro, Davide, Meldolesi, Jacopo

Journal:

BioMed Research International

Year:

2015

Language:

english

File:

PDF, 2.55 MB

english, 2015

26

REST-Governed Gene Expression Profiling in a Neuronal Cell Model Reveals Novel Direct and Indirect Processes of Repression and Up-Regulation

Garcia-Manteiga, Jose M., Bonfiglio, Silvia, Folladori, Lucrezia, Malosio, Maria L., Lazarevic, Dejan, Stupka, Elia, Cittaro, Davide, Meldolesi, Jacopo

Journal:

Frontiers in Cellular Neuroscience

Year:

2015

Language:

english

File:

PDF, 5.15 MB

english, 2015